Yes that is a problem..
I imgine tha tif you had soem type of filter to exlcude .project and .classpath, that woudl wokr..
Lets see since you only see .project and .classpath when not in the Java persepctive.. why not a file filter on all non jva perspectives in Eclipse??
That way becasue they never see it is does not get uploaded to cvs
Up till now I did not realize the solution either..thanks for providing me with the idea