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See this thread for details.
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Debugging

 
Siddhesh Khedekar
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how to do single stepping of servlets in eclipse
 
Freddy Wong
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Eclipse IDE Java Linux
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1. Start your server in debug mode.
2. Attach the debugger.
3. Set the breakpoints.

Whichever IDE that you use, the steps are pretty much the same.
 
Peter Johnson
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Check the Eclipse help text - it gives detailed steps on debugging servlets. (If you can't find it, ask and I'll dig up the exact location in the help text.)
 
Paul Clapham
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Click on the icon which looks like an arrow going up, across a dash, and back down again.
 
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