I have eclipse 3.7.2 , when I create a Java project and link the src_web folder, eclipse does not allow me to put breakpoints in JSP files. HOweever it does allow me to put break points in Java files?
Did you create a Java project, or a Dynamic Web Project? If you create the later, you should be able to set breakpoints in JSP files. (By the way, I hope that you don't have server-side script in your JSP...)