I did read your Web Start App Instructions document. If you wrote an app as they show in it, then you are writing a Java JFC/Swing based GUI with a top level frame titled "GUI Test". It is not sub-classing applet, so it must be expected that it does not embed within your web browser.
If your program is written in pure Java, it is not a win32 GUI program. It is an AWT, SWT, or JFC/Swing based Java GUI pprogram. Java calls Win32 code for you when the program is run on MS Windows. If you are working through the Bioinformatics Programming II course that PDF is part of, I can understand that you are being hit with a lot of terms that can be easy to confuse with one another. The answer you need does depend on how your program is written though, so the difference between Win32 and Swing is important.
Joined: Mar 13, 2004
yes is a Swing App, then need first convert my Swing App to Applet?
(not remeber the site but i think i can run a swing app into a web browser) bure really your are the experts!!! definetively