why would you copy that file? It's not necessary if you already have a JDK on the system and properly set JAVA_HOME
The major.minor version sometimes results from having a class compiled with a JDK1.4 compiler being run by a lower versioned JDK.
This might happen, for example, if you have JAVA_HOME pointing to a JDK 1.3 (and so
tomcat runs with that JDK), but have copied tools.jar from JDK 1.4.
Whatever is hapening in Tomcat, the major.minor version issue means that you have conflicting tools.jar somewhere.