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Netbeans file format problem

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I'm having a wierd problem in Netbeans on Windows XP, JDK 1.3.1_08. Apparently new .java files I create are being saved using the Unix convention for line separation (\n) and new .jsp files are using the Mac convention (\r). The Unix thing doesn't seem to cause any problems, but when I try to deploy the JSPs on Weblogic 6.1, they won't compile. If I load the files into JEdit and resave them after setting the separator to MS-DOS convention (\n\r) then everything is fine.
Any ideas? Can you specify the separator to use? I've searched google and the netbeans sites, but haven't seen anything like this mentioned.
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