Yes, Thats what I did, but our CVS project structure is not similar to RAD.
for eg --We have all the jsps and css in a folder called view/jsp and view/css view/js etc
also we have some config files and tlds in src/conf dir.
When I build it , the view files should be copied to the WebContent folder in RAD and the config files to the webcontent/web-inf folder.
the
java src and properties are getting cmpiled and copied in webcontent/web-inf/classes correctly.
I tried checking the allow output folders and tried add the view and conf folders to src and setting the output folders for them. but that didnt work out ..