Finally got Frontman working in Eclipse after starting a clean project and working through software issues on my machine.
What Eclipse showed me is that the command class GetHelloWorldMessageCommand.java couldn't compile because there was some kind of system permissions lock on the APIs the project was calling in the JRE.

I added an external library that pointed the project to the APIs in another directory and then the class compiled.
Two things that are probably obvious to most everyone but I missed them.
The command classes have to be in their own package, they cannot sit in the default package.
The jsp's that will be called by the frontman need to be in a folder under the WEB-INF folder, they cannot sit directly in the WEB-INF folder.
These things were done in the Eclipse version when I built the project but the project did not work until the permissions on the APIs were resolved.
I went back to Netbeans and added the same fixes but the application still crashes and I am not sure overriding the default API's worked there.
Thanks to Bear for the support.