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Error when Applying patch on 4.0.0

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In order to fix the well known bug in WebSphere 4.0.0 to checkin a file over 8K, i installed this patch called was40_ae_ptf_2_SUN.tar. Everything was installed with 0 errors. But when i try to access my applications by giving just the server name followed by the Application's Web modules context root name, i get a page not found error HTTP 404. For example if i type the follwoing in the URL --http://trypdmweb.meritorauto.com/pdmportal/
i get that error. But when i specify the jsp page after the path the page shows up. For example http://trypdmweb.meritorauto.com/pdmportal/index.jsp?
it works.
And also none of the images show up on my jsp page anymore. Can anyone please tell me what went wrong inthe upgrade. I had tried this earlier and it didnt work, so i uninstalled the patch. I tried it again thinking that it was to do somehting with the path, but it didnt' work either.
Please help
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