When I comment out the input stream from the method above, the method works without any failures, so I think it has something to do with the IO.
Also, when I try ping istead of my test .bat file, the IO succeeds (which is much more complext than the IO from my test .bat file).
Java 5 Javadoc for java.lang.Process object states that there are problems for various types of executions:
The methods that create processes may not work well for special processes on certain native platforms, such as native windowing processes, daemon processes, Win16/DOS processes on Microsoft Windows, or shell scripts. The created subprocess does not have its own terminal or console. All its standard io (i.e. stdin, stdout, stderr) operations will be redirected to the parent process through three streams (getOutputStream(), getInputStream(), getErrorStream()). The parent process uses these streams to feed input to and get output from the subprocess. Because some native platforms only provide limited buffer size for standard input and output streams, failure to promptly write the input stream or read the output stream of the subprocess may cause the subprocess to block, and even deadlock.
Wish I knew why this was such an issue.
...Mike